质粒名称: | pLgw V5-EcoDam |
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出品公司: | 爱迪基因 |
目录编号: | 59210 |
存储实验室: | Bas van Steensel |
载体骨架基本信息 |
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载体名称: | HIV-CS-CG |
载体出品公司: | PMID 9733856 |
载体抗性: | 氨苄青霉素 |
空载体大小: | -- |
完整质粒大小: | -- |
载体修饰: | -- |
载体类型: | 哺乳动物表达,慢病毒;DamID |
筛选标记: | Zeo标记在LTRs之外,不会被包装成病毒。 |
高拷贝/低拷贝: | -- |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | EcoDam,DNA adenine methyltransferase |
物种来源: | E. coli |
插入大小: | -- |
基因突变: | -- |
GenBank编号 | -- |
启动子 | heat shock minimal pomoter |
标签/融合蛋白: | V5(主干上的N终端) |
克隆方法: | -- |
5' 克隆位点: | -- |
3' 克隆位点: | -- |
5' 测序引物 | pCasper-hs |
3' 测序引物 | -- |
文献引用方法 |
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材料和方法部分: | pLgw V5-EcoDam was a gift from Bas van Steensel (Addgene plasmid # 59210 ; http://n2t.net/addgene:59210 ; RRID:Addgene_59210) |
参考文献部分: | Human heterochromatin proteins form large domains containing KRAB-ZNF genes. Vogel MJ, Guelen L, de Wit E, Peric-Hupkes D, Loden M, Talhout W, Feenstra M, Abbas B, Classen AK, van Steensel B. Genome Res. 2006 Dec;16(12):1493-504. Epub 2006 Oct 12. 10.1101/gr.5391806 PubMed 17038565 |
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载体基本信息
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载体序列
LOCUS pLgw V5-EcoDam 8629 bp ds-DNA circular SYN 06-AUG-2018 DEFINITION Mammalian DamID control lentiviral vector for expression of V5-Dam only . ACCESSION . VERSION . KEYWORDS pLgw V5-EcoDam SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8629) AUTHORS Vogel MJ, Guelen L, de Wit E, Peric-Hupkes D, Loden M, Talhout W, Feenstra M, Abbas B, Classen AK, van Steensel B TITLE Human heterochromatin proteins form large domains containing KRAB-ZNF genes. JOURNAL Genome Res. 2006 Dec;16(12):1493-504. Epub 2006 Oct 12. PUBMED 17038565 REFERENCE 2 (bases 1 to 8629) AUTHORS . TITLE Direct Submission JOURNAL Exported Aug 6, 2018 from SnapGene Server 1.1.58 http://www.snapgene.com FEATURES Location/Qualifiers source 1..8629 /organism="synthetic DNA construct" /mol_type="other DNA" rep_origin 36..171 /label=SV40 ori /note="SV40 origin of replication" primer_bind 98..117 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" promoter 233..280 /label=EM7 promoter /note="synthetic bacterial promoter " CDS 299..673 /codon_start=1 /gene="Sh ble from Streptoalloteichus hindustanus" /product="antibiotic-binding protein" /label=BleoR /note="confers resistance to bleomycin, phleomycin, and Zeocin(TM)" /translation="MAKLTSAVPVLTARDVAGAVEFWTDRLGFSRDFVEDDFAGVVRDD VTLFISAVQDQVVPDNTLAWVWVRGLDELYAEWSEVVSTNFRDASGPAMTEIGEQPWGR EFALRDPAGNCVHFVAEEQD" polyA_signal 803..924 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(840..859) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 894..913 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" primer_bind complement(973..989) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(973..989) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(986..1008) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 997..1013 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(1021..1051) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 1066..1087 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(1204..1221) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(1375..1963) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(1455..1474) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(2134..2994) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 2757..2776 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(2995..3099) /gene="bla" /label=AmpR promoter primer_bind complement(3174..3193) /label=pRS-marker /note="pRS vectors, use to sequence yeast selectable marker" enhancer 3365..3744 /label=CMV enhancer /note="human cytomegalovirus immediate early enhancer" promoter 3746..3944 /label=CMV promoter /note="human cytomegalovirus (CMV) immediate early promoter" primer_bind 3899..3919 /label=CMV-F /note="Human CMV immediate early promoter, forward primer" LTR 3962..4142 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 4186..4311 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 4804..5037 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." promoter 5728..5966 /label=hsp70 promoter /note="Drosophila melanogaster hsp70Bb promoter" primer_bind 5913..5934 /label=pCasper-hs /note="Drosophila Hsp70 promoter, forward primer" protein_bind 6019..6043 /gene="mutant version of attB" /label=attB1 /bound_moiety="BP Clonase(TM)" /note="recombination site for the Gateway(R) BP reaction" protein_bind complement(6119..6143) /gene="mutant version of attB" /label=attB2 /bound_moiety="BP Clonase(TM)" /note="recombination site for the Gateway(R) BP reaction" CDS 6154..6195 /codon_start=1 /product="epitope tag from simian virus 5" /label=V5 tag /translation="GKPIPNPLLGLDST" LTR 7560..7740 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" primer_bind complement(7766..7783) /label=BGH-rev /note="Bovine growth hormone terminator, reverse primer. Also called BGH reverse" polyA_signal 7772..7996 /label=bGH poly(A) signal /note="bovine growth hormone polyadenylation signal" rep_origin 8042..8470 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(8129..8148) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 8339..8360 /label=F1ori-F /note="F1 origin, forward primer" primer_bind complement(8479..8499) /label=pBABE 3' /note="SV40 enhancer, reverse primer for pBABE vectors" promoter 8484..185 /label=SV40 promoter /note="SV40 enhancer and early promoter" ORIGIN 1 agtcagcaac catagtcccg cccctaactc cgcccatccc gcccctaact ccgcccagtt 61 ccgcccattc tccgccccat ggctgactaa ttttttttat ttatgcagag gccgaggccg 121 cctctgcctc tgagctattc cagaagtagt gaggaggctt ttttggaggc ctaggctttt 181 gcaaaaagct cccgggagct tgtatatcca ttttcggatc tgatcagcac gtgttgacaa 241 ttaatcatcg gcatagtata tcggcatagt ataatacgac aaggtgagga actaaaccat 301 ggccaagttg accagtgccg ttccggtgct caccgcgcgc gacgtcgccg gagcggtcga 361 gttctggacc gaccggctcg ggttctcccg ggacttcgtg gaggacgact tcgccggtgt 421 ggtccgggac gacgtgaccc tgttcatcag cgcggtccag gaccaggtgg tgccggacaa 481 caccctggcc tgggtgtggg tgcgcggcct ggacgagctg tacgccgagt ggtcggaggt 541 cgtgtccacg aacttccggg acgcctccgg gccggccatg accgagatcg gcgagcagcc 601 gtgggggcgg gagttcgccc tgcgcgaccc ggccggcaac tgcgtgcact tcgtggccga 661 ggagcaggac tgacacgtgc tacgagattt cgattccacc gccgccttct atgaaaggtt 721 gggcttcgga atcgttttcc gggacgccgg ctggatgatc ctccagcgcg gggatctcat 781 gctggagttc ttcgcccacc ccaacttgtt tattgcagct tataatggtt acaaataaag 841 caatagcatc acaaatttca caaataaagc atttttttca ctgcattcta gttgtggttt 901 gtccaaactc atcaatgtat cttatcatgt ctgtataccg tcgacctcta gctagagctt 961 ggcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca caattccaca 1021 caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag tgagctaact 1081 cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt cgtgccagct 1141 gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc gctcttccgc 1201 ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg tatcagctca 1261 ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa agaacatgtg 1321 agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg cgtttttcca 1381 taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga ggtggcgaaa 1441 cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg tgcgctctcc 1501 tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg gaagcgtggc 1561 gctttctcaa tgctcacgct gtaggtatct cagttcggtg taggtcgttc gctccaagct 1621 gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg gtaactatcg 1681 tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca ctggtaacag 1741 gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt ggcctaacta 1801 cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag ttaccttcgg 1861 aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg gtggtttttt 1921 tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc ctttgatctt 1981 ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt tggtcatgag 2041 attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt ttaaatcaat 2101 ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca gtgaggcacc 2161 tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg tcgtgtagat 2221 aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac cgcgagaccc 2281 acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg ccgagcgcag 2341 aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc gggaagctag 2401 agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta caggcatcgt 2461 ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac gatcaaggcg 2521 agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc ctccgatcgt 2581 tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac tgcataattc 2641 tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact caaccaagtc 2701 attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa tacgggataa 2761 taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt cttcggggcg 2821 aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca ctcgtgcacc 2881 caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa aaacaggaag 2941 gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac tcatactctt 3001 cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg gatacatatt 3061 tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc gaaaagtgcc 3121 acctgacgtc gacggatcgg gagatctccc gatcccctat ggtcgactct cagtacaatc 3181 tgctctgatg ccgcatagtt aagccagtat ctgctccctg cttgtgtgtt ggaggtcgct 3241 gagtagtgcg cgagcaaaat ttaagctaca acaaggcaag gcttgaccga caattgcatg 3301 aagaatctgc ttagggttag gcgttttgcg ctgcttcgcg atgtacgggc cagatatacg 3361 cgttgacatt gattattgac tagttattaa tagtaatcaa ttacggggtc attagttcat 3421 agcccatata tggagttccg cgttacataa cttacggtaa atggcccgcc tggctgaccg 3481 cccaacgacc cccgcccatt gacgtcaata atgacgtatg ttcccatagt aacgccaata 3541 gggactttcc attgacgtca atgggtggac tatttacggt aaactgccca cttggcagta 3601 catcaagtgt atcatatgcc aagtacgccc cctattgacg tcaatgacgg taaatggccc 3661 gcctggcatt atgcccagta catgacctta tgggactttc ctacttggca gtacatctac 3721 gtattagtca tcgctattac catggtgatg cggttttggc agtacatcaa tgggcgtgga 3781 tagcggtttg actcacgggg atttccaagt ctccacccca ttgacgtcaa tgggagtttg 3841 ttttggcacc aaaatcaacg ggactttcca aaatgtcgta acaactccgc cccattgacg 3901 caaatgggcg gtaggcgtgt acggtgggag gtctatataa gcagcgcgtt ttgcctgtac 3961 tgggtctctc tggttagacc agatctgagc ctgggagctc tctggctaac tagggaaccc 4021 actgcttaag cctcaataaa gcttgccttg agtgcttcaa gtagtgtgtg cccgtctgtt 4081 gtgtgactct ggtaactaga gatccctcag acccttttag tcagtgtgga aaatctctag 4141 cagtggcgcc cgaacaggga cctgaaagcg aaagggaaac cagagctctc tcgacgcagg 4201 actcggcttg ctgaagcgcg cacggcaaga ggcgaggggc ggcgactggt gagtacgcca 4261 aaaattttga ctagcggagg ctagaaggag agagatgggt gcgagagcgt cagtattaag 4321 cgggggagaa ttagatcgcg atgggaaaaa attcggttaa ggccaggggg aaagaaaaaa 4381 tataaattaa aacatatagt atgggcaagc agggagctag aacgattcgc agttaatcct 4441 ggcctgttag aaacatcaga aggctgtaga caaatactgg gacagctaca accatccctt 4501 cagacaggat cagaagaact tagatcatta tataatacag tagcaaccct ctattgtgtg 4561 catcaaagga tagagataaa agacaccaag gaagctttag acaagataga ggaagagcaa 4621 aacaaaagta agaccaccgc acagcaagcg gccgctgatc ttcagacctg gaggaggaga 4681 tatgagggac aattggagaa gtgaattata taaatataaa gtagtaaaaa ttgaaccatt 4741 aggagtagca cccaccaagg caaagagaag agtggtgcag agagaaaaaa gagcagtggg 4801 aataggagct ttgttccttg ggttcttggg agcagcagga agcactatgg gcgcagcctc 4861 aatgacgctg acggtacagg ccagacaatt attgtctggt atagtgcagc agcagaacaa 4921 tttgctgagg gctattgagg cgcaacagca tctgttgcaa ctcacagtct ggggcatcaa 4981 gcagctccag gcaagaatcc tggctgtgga aagataccta aaggatcaac agctcctggg 5041 gatttggggt tgctctggaa aactcatttg caccactgct gtgccttgga atgctagttg 5101 gagtaataaa tctctggaac agatctggaa tcacacgacc tggatggagt gggacagaga 5161 aattaacaat tacacaagct taatacactc cttaattgaa gaatcgcaaa accagcaaga 5221 aaagaatgaa caagaattat tggaattaga taaatgggca agtttgtgga attggtttaa 5281 cataacaaat tggctgtggt atataaaatt attcataatg atagtaggag gcttggtagg 5341 tttaagaata gtttttgctg tactttctat agtgaataga gttaggcagg gatattcacc 5401 attatcgttt cagacccacc tcccaacccc gaggggaccc gacaggcccg aaggaataga 5461 agaagaaggt ggagagagag acagagacag atccattcga ttagtgaacg gatcccccgg 5521 gctgcaggaa ttcagatctc ggccgcatat taagtgcatt gttctcgata ccgctaagtg 5581 cattgttctc gttagctcga tggacaagtg cattgttctc ttgctgaaag ctcgatggac 5641 aagtgcattg ttctcttgct gaaagctcga tggacaagtg cattgttctc ttgctgaaag 5701 ctcagtaccc gggagtaccc tcgaccgccg gagtataaat agaggcgctt cgtctacgga 5761 gcgacaattc aattcaaaca agcaaagtga acacgtcgct aagcgaaagc taagcaaata 5821 aacaagcgca gctgaacaag ctaaacaatc tgcagtaaag tgcaagttaa agtgaatcaa 5881 ttaaaagtaa ccagcaacca agtaaatcaa ctgcaactac tgaaatctgc caagaagtaa 5941 ttattgaata caagaagaga actctgaata ctttcaacaa gttaccgaga aagaagaact 6001 cacacacagc tagatcaaac aagtttgtac aaaaaagcag gctccgcggc cgcccccttc 6061 accatggaaa agaatggaac tgatgaagta tatattttta ataagggtgg gcgcgccgac 6121 ccagctttct tgtacaaagt ggttcgatcc ggtggtaagc ctatccctaa ccctctcctc 6181 ggtctcgatt ctacgatcga tttcgaaccg cggatgaaga aaaatcgcgc ttttttgaag 6241 tgggcagggg gcaagtatcc cctgcttgat gatattaaac ggcatttgcc caagggcgaa 6301 tgtctggttg agccttttgt aggtgccggg tcggtgtttc tcaacaccga cttttctcgt 6361 tatatccttg ccgatatcaa tagcgacctg atcagtctct ataacattgt gaagatgcgt 6421 actgatgagt acgtacaggc cgcacgcgag ctgtttgttc ccgaaacaaa ttgcgccgag 6481 gtttactatc agttccgcga agagttcaac aaaagccagg atccgttccg tcgggcggta 6541 ctgtttttat atttgaaccg ctacggttac aacggcctgt gtcgttacaa tctgcgcggt 6601 gagtttaacg tgccgttcgg ccgctacaaa aaaccctatt tcccggaagc agagttgtat 6661 cacttcgctg aaaaagcgca gaatgccttt ttctattgtg agtcttacgc cgatagcatg 6721 gcgcgcgcag atgatgcatc cgtcgtctat tgcgatccgc cttatgcacc gctgtctgcg 6781 accgccaact ttacggcgta tcacacaaac agttttacgc ttgaacaaca agcgcatctg 6841 gcggagatcg ccgaaggtct ggttgagcgc catattccag tgctgatctc caatcacgat 6901 acgatgttaa cgcgtgagtg gtatcagcgc gcaaaattgc atgtcgtcaa agttcgacgc 6961 agtataagca gcaacggcgg cacacgtaaa aaggtggacg aactgctggc tttgtacaaa 7021 ccaggagtcg tttcacccgc gaaaaaataa ctcgagacct agaaaaacat ggagcaatca 7081 caagtagcaa tacagcagct accaatgctg cttgtgcctg gctagaagca caagaggagg 7141 aggaggtggg ttttccagtc acacctcagg tacctttaag accaatgact tacaaggcag 7201 ctgtagatct tagccacttt ttaaaagaaa aggggggact ggaagggcta attcactccc 7261 aacgaagaca agatatcctt gatctgtgga tctaccacac acaaggctac ttccctgatt 7321 ggcagaacta cacaccaggg ccagggatca gatatccact gacctttgga tggtgctaca 7381 agctagtacc agttgagcaa gagaaggtag aagaagccaa tgaaggagag aacacccgct 7441 tgttacaccc tgtgagcctg catgggatgg atgacccgga gagagaagta ttagagtgga 7501 ggtttgacag ccgcctagca tttcatcaca tggcccgaga gctgcatccg gactgtactg 7561 ggtctctctg gttagaccag atctgagcct gggagctctc tggctaacta gggaacccac 7621 tgcttaagcc tcaataaagc ttgccttgag tgcttcaagt agtgtgtgcc cgtctgttgt 7681 gtgactctgg taactagaga tccctcagac ccttttagtc agtgtggaaa atctctagca 7741 gggcccgttt aaacccgctg atcagcctcg actgtgcctt ctagttgcca gccatctgtt 7801 gtttgcccct cccccgtgcc ttccttgacc ctggaaggtg ccactcccac tgtcctttcc 7861 taataaaatg aggaaattgc atcgcattgt ctgagtaggt gtcattctat tctggggggt 7921 ggggtggggc aggacagcaa gggggaggat tgggaagaca atagcaggca tgctggggat 7981 gcggtgggct ctatggcttc tgaggcggaa agaaccagct ggggctctag ggggtatccc 8041 cacgcgccct gtagcggcgc attaagcgcg gcgggtgtgg tggttacgcg cagcgtgacc 8101 gctacacttg ccagcgccct agcgcccgct cctttcgctt tcttcccttc ctttctcgcc 8161 acgttcgccg gctttccccg tcaagctcta aatcggggca tccctttagg gttccgattt 8221 agtgctttac ggcacctcga ccccaaaaaa cttgattagg gtgatggttc acgtagtggg 8281 ccatcgccct gatagacggt ttttcgccct ttgacgttgg agtccacgtt ctttaatagt 8341 ggactcttgt tccaaactgg aacaacactc aaccctatct cggtctattc ttttgattta 8401 taagggattt tggggatttc ggcctattgg ttaaaaaatg agctgattta acaaaaattt 8461 aacgcgaatt aattctgtgg aatgtgtgtc agttagggtg tggaaagtcc ccaggctccc 8521 caggcaggca gaagtatgca aagcatgcat ctcaattagt cagcaaccag gtgtggaaag 8581 tccccaggct ccccagcagg cagaagtatg caaagcatgc atctcaatt //
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